PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00025013-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 705aa    MW: 79638.2 Da    PI: 9.0835
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00025013-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.81.8e-081772303990
                   FAR1  39 gkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                            gk+e++ ++  ++++rr++++tr  C+a++  +  + g++ ++++++ HnH+l 
  SMil_00025013-RA_Salv 177 GKNEKHPENqpKTTKRRRKPSTRNACRARVITRILDGGEFIISRFDEVHNHKLI 230
                            55555444455789999***********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-6177230IPR004330FAR1 DNA binding domain
PfamPF105512.8E-8352404IPR018289MULE transposase domain
PROSITE profilePS509669.804517553IPR007527Zinc finger, SWIM-type
PfamPF044344.8E-4523545IPR007527Zinc finger, SWIM-type
SMARTSM005750.0037528555IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MGEERNRIYL RLVDDRGGAR LFPVSPAVAV VGEDGCDGGG SLCCPIPSKG SREVGQPSLG  60
PFGRREREAS KRRRQRTAEA ERGSIFPAGD EGRPREREAA LAGGGAAISQ RGGADVREGK  120
RESVVCAECA ENNHVQANNF TSYLPICDDS LKPYVGQTFN SVDDAFDFYA LEGINPGKNE  180
KHPENQPKTT KRRRKPSTRN ACRARVITRI LDGGEFIISR FDEVHNHKLI SPDCRHLMKY  240
NRKVDASHHM VMLKCAKANI GPMRAFRLFK ELVGKYEDVG CTSNDFKNLS YQMNSYTEGS  300
DAQLLLERLI TKRDTDDQFK CEYLLDECHK VKSIFWSDAV GVHNYKVFGD SVSFDATYTT  360
NRYDMIFAPF TGKDNHGGCV TFAAGLLTRE DIPAYFRDLR MSGLFRTTSM SESENSFFRK  420
YLNRHSNLAA FYIHYESAMQ AQRHSYKQLC MTDQTTTPKL KTNKPIEQHA SRIYTSKIFL  480
EVQVEIVEAF NRCRIRSMDT GHEEHRYAVD DRSSGVFNVA HNTLSNTIDC SCKHFLKKGL  540
VCRHMFVVMH NIGLNAIPQK YILGRWMQNA GVGVMSNTQT QTSNKPLMSE AFRCIAIVDG  600
NEALSASLIA ELKRWADANQ PQSSTSVNAK ERMFQTFYGA KLPTKITIHP PDHVKTKGSG  660
KRLKSTYEKE LEKAKKPRRR CQKCGFMVRH DSRNCGKVVE EDSEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16473REREASKRRR
2186192PKTTKRR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3136228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-25FAR1-related sequence 5